PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002521.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 257aa    MW: 29398.6 Da    PI: 6.6028
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002521.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.51.1e-313711750129
                      NAM  50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                               +k +++ewyfFs rd+kyatg r+nrat+sgyWkatgkd++v++  +++ vg++ktLvfyk+rap+g kt W+mhe+rle
  Itr_sc002521.1_g00002.1  37 VAKLNSSEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVIDPtTRAIVGMRKTLVFYKNRAPNGIKTGWIMHEFRLE 117
                              3445678**************************************966777***************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.9071135IPR003441NAC domain
PfamPF023656.0E-1630116IPR003441NAC domain
SuperFamilySSF1019411.96E-3932135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MTYDDNLGQF FHCDPLSDRF TRKGLLNPRP RIVIEEVAKL NSSEWYFFSF RDRKYATGFR  60
TNRATTSGYW KATGKDRTVI DPTTRAIVGM RKTLVFYKNR APNGIKTGWI MHEFRLENPH  120
IPPKEDWVLC RVFHKSKTET NNEDNIMYDD IASGNLEVCL PSTAAYRPVA AAYSHSHSPP  180
NQTQTSSTAN FFTAAPADQR GFPQSSRHNT NVAPSSNDYE FLFDDMNFED HPSMQDGGVH  240
SSIEDMRFDD ENGLAFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-283313861168NO APICAL MERISTEM PROTEIN
1ut4_B6e-283313861168NO APICAL MERISTEM PROTEIN
1ut7_A6e-283313861168NO APICAL MERISTEM PROTEIN
1ut7_B6e-283313861168NO APICAL MERISTEM PROTEIN
3swm_A6e-283313864171NAC domain-containing protein 19
3swm_B6e-283313864171NAC domain-containing protein 19
3swm_C6e-283313864171NAC domain-containing protein 19
3swm_D6e-283313864171NAC domain-containing protein 19
3swp_A6e-283313864171NAC domain-containing protein 19
3swp_B6e-283313864171NAC domain-containing protein 19
3swp_C6e-283313864171NAC domain-containing protein 19
3swp_D6e-283313864171NAC domain-containing protein 19
4dul_A6e-283313861168NAC domain-containing protein 19
4dul_B6e-283313861168NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019188425.11e-146PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
TrEMBLA0A1S3ZZ699e-87A0A1S3ZZ69_TOBAC; NAC domain-containing protein 21/22-like
TrEMBLA0A1U7YCR19e-87A0A1U7YCR1_NICSY; NAC domain-containing protein 21/22-like
STRINGXP_009800923.11e-87(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18822466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.19e-62NAC domain containing protein 74