PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002092.1_g00013.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 467aa    MW: 52486.2 Da    PI: 6.6447
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002092.1_g00013.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.2e-13289335354
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              ++h e+Er+RR+++N++f  Lr+++P+       K++Ka+ L  Av YI+ L
  Itr_sc002092.1_g00013.1 289 MNHVEAERQRREKLNHRFYALRSVVPNV-----SKMDKASLLADAVTYINRL 335
                              589************************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.0E-3717179IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.66E-18285356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.971286335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.91E-14289340No hitNo description
PfamPF000101.6E-10290335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-17290349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-16292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MEEILSSSSS SSIPNSLQKR IQFFLHNRPE WWVYAIFWQA TKGGHGRVVL SWGDGHFRGT  60
KGVGPSRSNP LQLQNKFEGE GLVEGNVTEY AEWYYMVSMT KSFAAPDDLI VQTFDSGSYI  120
WLSDSNQVQF YHSERAKEAH LHGINTLVCF STSAGVIELG SSDSIHEHWE LLQIGRSIFN  180
AQNTSLPQTQ NQTQSQDLFP FSQDLNQCLS PIDFRLGDPH QEKEKESCRA VDLHGPNSDI  240
KKEVLVINDL SPDSGNSDFF ETTLTHQSAM VGSRKRSRKG ALTGREMAMN HVEAERQRRE  300
KLNHRFYALR SVVPNVSKMD KASLLADAVT YINRLKAKVE DLENKLGTTH GENQMSRKRI  360
MEIMHDAQST TTSTVDHVMG GGCAFGAMDV EVKIIGSEAM IRVHSPDLNY PAARLMNVLR  420
EMELKIHHAS VSSVRDLMLQ DVVIRVPDGL TNEEDALKAV ILRRLQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-23284345263Transcription factor MYC2
5gnj_B5e-23284345263Transcription factor MYC2
5gnj_E5e-23284345263Transcription factor MYC2
5gnj_F5e-23284345263Transcription factor MYC2
5gnj_G5e-23284345263Transcription factor MYC2
5gnj_I5e-23284345263Transcription factor MYC2
5gnj_M5e-23284345263Transcription factor MYC2
5gnj_N5e-23284345263Transcription factor MYC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019192853.10.0PREDICTED: transcription factor bHLH14-like
TrEMBLA0A1S3YPA91e-142A0A1S3YPA9_TOBAC; transcription factor MYC4-like
STRINGSolyc08g008600.2.11e-141(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.19e-73bHLH family protein