PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001509.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TCP
Protein Properties Length: 194aa    MW: 20850.7 Da    PI: 10.6332
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001509.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP66.87.4e-21112338135
                      TCP  38 eLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesssssasnsssg..............kaaksaaksk 98 
                              +LGfdk+skt++WLl ++  aik+l ++            +ss secea+s +  ++++                  a++++   k
  Itr_sc001509.1_g00008.1   1 MLGFDKASKTVDWLLLKSRLAIKDLKQQnhcaaagggasAASSTSECEAASGVLDQEFEPPMggdnvaaagklpkmGAKEKKGAAK 86 
                              8***************************9999999977555555788888888888843333677777899999975555555778 PP

                      TCP  99 ksqksaasalnlakesrakarararertrekmriknk 135
                               + +  a+++ l+kesr+kar+rarert+ km++kn+
  Itr_sc001509.1_g00008.1  87 AAGRIRAAFHPLSKESRNKARERARERTKMKMKKKNN 123
                              888888889************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136916.138125IPR017887Transcription factor TCP subgroup
PfamPF036341.6E-181120IPR005333Transcription factor, TCP
PROSITE profilePS5137010.643100117IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MLGFDKASKT VDWLLLKSRL AIKDLKQQNH CAAAGGGASA ASSTSECEAA SGVLDQEFEP  60
PMGGDNVAAA GKLPKMGAKE KKGAAKAAGR IRAAFHPLSK ESRNKARERA RERTKMKMKK  120
KNNMLGETPP PPQEMGGATH NVKTTNEPPP AAAAEELATS HNWSLSNIFH SHQIAKHLAL  180
RWQSSDSRLS GVRY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019189667.13e-71PREDICTED: transcription factor TEOSINTE BRANCHED 1-like isoform X2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3423
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.23e-07TCP family protein