PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001498.1_g00011.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TCP
Protein Properties Length: 245aa    MW: 25543.9 Da    PI: 10.1452
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001498.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.54.9e-3828114286
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasns 85 
                               +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++  +a+ + ss+s++
  Itr_sc001498.1_g00011.1  28 VVKKPPAKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFStiSASLRTSSSSAP 113
                              689******************************************************************87754222222222222 PP

                      TCP  86 s 86 
                              s
  Itr_sc001498.1_g00011.1 114 S 114
                              2 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.0E-3434121IPR005333Transcription factor, TCP
PROSITE profilePS5136927.6753488IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSTSVEANAG ALIDPQQLPS SGNGSLAVVK KPPAKDRHSK VDGRGRRIRM PIVCAARVFQ  60
LTRELGHKSD GQTIEWLLRQ AEPSIIAATG TGTIPASFST ISASLRTSSS SAPSLSASLD  120
HKPMAPAPFI LGKRLRTEED GLDDGNKEVV GSAAAGFWAA LPARPDFGQV WSFAAAAAAP  180
HEMVVPTPAA AAAALNSRFF QQQMGEASAA RVGNYLPMAQ GHLNLLASLS GTPPPSSGRR  240
DDDAR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019163704.11e-157PREDICTED: transcription factor TCP7-like
SwissprotQ9FMX26e-87TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A484KX081e-113A0A484KX08_9ASTE; Uncharacterized protein
STRINGSolyc04g009180.1.11e-112(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39512242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.12e-77TCP family protein