PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001279.1_g00013.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family G2-like
Protein Properties Length: 320aa    MW: 36453.2 Da    PI: 9.6025
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001279.1_g00013.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.42.8e-32195248255
                  G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Itr_sc001279.1_g00013.1 195 PRMRWTSTLHSRFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 248
                              9****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.43E-15192248IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-28193248IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-24195248IPR006447Myb domain, plants
PfamPF002495.3E-7196247IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPTTK QQKITEDNTH HHHEMDLGFW KRALDTKNQS FSNSKPSCNF  60
DLSLSNHPNH SSSSPSPTSV PNNPNIFHYH HPNTIHQNNL YSHHLFQHHQ LHQQQQTGPD  120
FGFLRPIRGI PVYYQTPSSN SSHPFPFPHI PFDNNSVTAT SSSSAHQHHH QTSAGLMRSR  180
FLSSRFPAKR SMRAPRMRWT STLHSRFVHA VELLGGHERA TPKSVLELMD VKDLTLAHVK  240
SHLQMYRTVK TTDKAAAATS GQSEVFDNGS SGETSEDLTL DIRTSRKSDE FSVQQRRTNM  300
HSNQDNNDNY HHVLWSNSSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-16196250458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-16196250458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-16196250458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-16196250458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-16196250458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-16196250458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-16196250458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-16196250458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019190662.10.0PREDICTED: probable transcription factor KAN2 isoform X2
SwissprotQ9C6161e-74KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A371F7I01e-102A0A371F7I0_MUCPR; Putative transcription factor KAN2 (Fragment)
STRINGVIT_02s0012g01940.t011e-101(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27382255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.11e-46G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]