PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001176.1_g00024.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family G2-like
Protein Properties Length: 471aa    MW: 50662.9 Da    PI: 7.1544
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001176.1_g00024.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like21.64.7e-07254272119
                  G2-like   1 kprlrWtpeLHerFveave 19 
                              k+r++W+p+LH+rFv+a++
  Itr_sc001176.1_g00024.1 254 KARRCWSPDLHRRFVNALQ 272
                              68***************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.1E-5252272IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MLLKSFGDHH LHPHHHNDQT LQKLEEFLSR LEEERLKIDA FKRELPLCMQ LLTNAMEASR  60
QQLQSFRANN NNNHGATRPV LEEFIPLKNS SSPEGTADQK AAAATGDKAN WMTTAQLWSQ  120
GNNSNNNNNN NNESAMQQKL EQIQNKETEI GFCVSPNPQM NNNNGGAFLP FSKDRSGSCP  180
SPTLALASPD GKDVEEKKSL EIVNLGNKCS SNGPATPEQG KSGGCGGGGG GGANLPPPQD  240
SQTAAGTAAQ PHRKARRCWS PDLHRRFVNA LQXPHNLIER LEDAGRRTCT DALLMLFKCW  300
EVLKKYRLHT RRPGPTPQAA AAAAPQLVVL GGIWVPPEYA TAAAAAHGGA QAAAAAAATL  360
YGAAHPTTTH AHHPASQHFS VGHEFYGAPT PAPPPQHLPL HHPLHHPFHM YKPPPQAPES  420
DGRSESIEDG KSESGSWRAD SGGENGGEGR ALAALREDGE VSNGSDITLK F
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019171025.10.0PREDICTED: myb family transcription factor EFM-like
TrEMBLA0A1U7ZLX01e-120A0A1U7ZLX0_NELNU; myb family transcription factor EFM-like
STRINGevm.model.supercontig_127.551e-122(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87942229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-44G2-like family protein