PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000863.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 269aa    MW: 30104.7 Da    PI: 7.2512
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000863.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-20120169255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GVr+++ +g+W+AeIrdp+    + +r++lg+f taeeAa+a+++a+ +++g
  Itr_sc000863.1_g00006.1 120 NYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFKTAEEAARAYDRAAIEFRG 169
                              59*******.**********94....36************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.21E-34119176No hitNo description
PROSITE profilePS5103224.908120177IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-22120177IPR016177DNA-binding domain
PfamPF008472.5E-14120169IPR001471AP2/ERF domain
SMARTSM003808.4E-38120183IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-32120177IPR001471AP2/ERF domain
PRINTSPR003674.7E-12121132IPR001471AP2/ERF domain
PRINTSPR003674.7E-12143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MQWSTQILPP EPFSTAANRP SPPPPLTGAH QEFSVMVSAL QNVMNGGDAA SDVNFDSRIP  60
TACEGFAELP ALEQRCQFCK YEGCLGCNFF AAPDNIARQT EEEKKKEKIN SVTTKRKKKN  120
YRGVRQRPWG KWAAEIRDPR KAARVWLGTF KTAEEAARAY DRAAIEFRGP RAKLNFSFAD  180
YTNTSTTTTM AVTTSSTRQQ HVTNPSSSST ISQQPRQEVA VVQENSENGT NWSAPAKMEV  240
GNGDEEFQEW MKMLMDFNDV SSDYILQLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-23117176262ATERF1
3gcc_A2e-23117176262ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103118KKKEKINSVTTKRKKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019166004.11e-143PREDICTED: ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ068e-38EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A1S4BA875e-58A0A1S4BA87_TOBAC; ethylene-responsive transcription factor ERF109-like
STRINGXP_009784619.11e-58(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.12e-36redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]