PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000842.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARF
Protein Properties Length: 886aa    MW: 98606 Da    PI: 6.6096
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000842.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.13.5e-23173274199
                              EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                              f+k+lt sd++++g +++p++ ae+       ++ +++ ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v
  Itr_sc000842.1_g00003.1 173 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSQTPPC-QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSV 257
                              99*****************************7555555.59********************************************* PP

                              EEEE-SSSEE..EEEEE-S CS
                       B3  81 vFkldgrsefelvvkvfrk 99 
                              +F   ++++ +l+++++r+
  Itr_sc000842.1_g00003.1 258 LFI--WNEKNQLLLGIRRA 274
                              ***..8899999****997 PP

2Auxin_resp117.51.1e-38299382183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                              aahaa+t+s F+v+YnPras+seFv++++k+ ka++ +++svGmRf+m fete+ss rr++Gt++g+ dldpvrW nS+Wrs+k
  Itr_sc000842.1_g00003.1 299 AAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWANSHWRSVK 382
                              79*********************************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.09E-49157302IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-41166288IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-21172273No hitNo description
PROSITE profilePS5086312.083173275IPR003340B3 DNA binding domain
PfamPF023622.2E-21173274IPR003340B3 DNA binding domain
SMARTSM010191.4E-23173275IPR003340B3 DNA binding domain
PfamPF065073.3E-34299382IPR010525Auxin response factor
SuperFamilySSF542775.76E-7759834No hitNo description
PROSITE profilePS5174523.991760844IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 886 aa     Download sequence    Send to blast
MHSRFGVELR MGLSRGVGAR FRGVNLVGSL GFDETEMEMV LGWRKNMKLS TSGMGQQPHE  60
GENKCLNSEL WHACAGPLVC LPTVGSRVVY FPQGHSEQVA ATTNKEVDGQ IPNYPNLPPQ  120
LICQLHNVTM HADVETDEVY AQMTLQPLTP EEQKDTYLPV ELGIPSKQPT NYFCKTLTAS  180
DTSTHGGFSV PRRAAEKVFP PLDFSQTPPC QELIARDLHD VEWKFRHIFR GQPKRHLLTT  240
GWSVFVSAKR LVAGDSVLFI WNEKNQLLLG IRRATRPQTV MPSSVLSSDS MHIGLLAAAA  300
HAAATNSCFT VFYNPRASPS EFVIPLSKYI KAVYHTRISV GMRFRMLFET EESSVRRYMG  360
TITGIGDLDP VRWANSHWRS VKVGWDESTA GERQPRVSLW EIEPLTTFPM YSSLFPLRLK  420
RPWYPGPSSF QDSNNEVING MTWLRGEIGE QGGPQSLNVQ SFGMLPWMQQ RVDPAMLRTD  480
INQQYQAMLA AGMQNFGSAD LFKQQLMQFQ QPVQYLQASG SHNPLLQQQQ QVIQQPMSSH  540
MLPAQTQMLS DSLQRHPQQQ TSGQTEEPTQ QHAYQEAFPV SHDQLQQRPL SNIPSPSFSK  600
TNFADTNSKF APPVSPSSMQ SMLGSLCPEG SSNLLNFKRT GQSALNEHQP QQSWLPKFAN  660
SHISTCSNSV STPSYPGKEA SSQQETCAVD AHNQSFFGAS IDSPGLLLPT TLSSVTTSVV  720
ADVSSLPSGA SGFQNSPYGY VQDSSELVSS AGQDDQSTPR TFVKVYKSGY VGRSLDITRI  780
SSYHELRQEL AQMFGIEGLL EDPQRSGWQL VFVDRENDVL LLGDDPWEAF VNNVWYIKIL  840
SPEDVQKLGK QEAKSLSRNT IERMHGSGAD GRDHLSGFPS LGSLEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1606640351388Auxin response factor 5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF2168640.0EF216864.2 Ipomoea nil auxin response factor 8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009612885.10.0PREDICTED: auxin response factor 8-like
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLA3F7710.0A3F771_IPONI; Auxin response factor
STRINGSolyc02g037530.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38572339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8