PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000760.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family G2-like
Protein Properties Length: 220aa    MW: 24139.3 Da    PI: 6.3628
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000760.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like31.63.6e-101203655
                  G2-like 36 mkvkgLtlehvkSHLQkYRl 55
                             m+vkgLtl+h+kSHLQkYRl
  Itr_sc000760.1_g00005.1  1 MGVKGLTLYHLKSHLQKYRL 20
                             99*****************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-9121IPR009057Homeodomain-like
PfamPF143795.6E-2678124IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010628Biological Processpositive regulation of gene expression
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MGVKGLTLYH LKSHLQKYRL GKQSSKEATD NSKDGASRAV EERLDLLDAS CVAESQDIGS  60
PTSGSSRMIA QELNDGYQVT EALRAQMEVQ RKLHEQLEVQ RRLQLRIEAQ SKYLQSILEK  120
ACKTLNHQAV AADGLEAARE ELSELSIKVA NDPPHTIFPL PSLPDIAVDC LTPNGTPAST  180
MSMSSLAALK KRPRGFTNEE SLPLDSNTKQ QVEWTLANAG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00378DAPTransfer from AT3G24120Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019181015.11e-140PREDICTED: protein PHR1-LIKE 2
SwissprotQ94A574e-71PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA0A328D3P21e-91A0A328D3P2_9ASTE; Uncharacterized protein
STRINGPOPTR_0001s32200.15e-90(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37912344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.19e-62G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]