PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000760.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family G2-like
Protein Properties Length: 75aa    MW: 8171.05 Da    PI: 6.5017
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000760.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like42.51.4e-135074125
                  G2-like  1 kprlrWtpeLHerFveaveqLGGse 25
                             kprlrWt eLHerFv+av+qLGG++
  Itr_sc000760.1_g00004.1 50 KPRLRWTAELHERFVDAVTQLGGPD 74
                             79*********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-124774IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-85075IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MYSAVPLRGL GLDAGDYNHH HHHHNHQGAL SLDGTNLPGD ACLVLTADPK PRLRWTAELH  60
ERFVDAVTQL GGPDS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019181015.14e-42PREDICTED: protein PHR1-LIKE 2
SwissprotQ94A573e-26PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA0A0V0HHI64e-34A0A0V0HHI6_SOLCH; Putative ovule protein
TrEMBLA0A0V0I1F94e-32A0A0V0I1F9_SOLCH; Putative ovule protein
STRINGPGSC0003DMT4000803812e-32(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37912344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.16e-27G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]