PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000727.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ZF-HD
Protein Properties Length: 297aa    MW: 32224.1 Da    PI: 8.3205
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000727.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.41.5e-3252112359
              ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee....gtaaalkCaACgCHRnFHRrevee 59 
                               v+YkeClkNhAaslGghavDGCgEfmps+++     +++a lkCaACgCHRnFHRre+ee
  Itr_sc000727.1_g00004.1  52 VVTYKECLKNHAASLGGHAVDGCGEFMPSPTAAaaasTNPALLKCAACGCHRNFHRREPEE 112
                              589*************************987653222458889***************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257748.0E-1840109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.0E-2853110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.0E-2954109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.45255109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.4E-17166236IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-28174237IPR009057Homeodomain-like
TIGRFAMsTIGR015658.3E-26176233IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDLGGLGSSN TTVKTPETEI QTPTILLHHA KPLSFSSNGV LKRHNPLHHA VVVTYKECLK  60
NHAASLGGHA VDGCGEFMPS PTAAAAASTN PALLKCAACG CHRNFHRREP EETLPKALEY  120
QSLHRHRPPP PPPSSDSPSP PPISSSAPHM LLALSTAFSG PPTDTNTPIS APLLQKKRFR  180
TKFTQDQKDK MLEFADKVGW KIQKRDEELI SQFCTQVGVE RGVLKVWMHN NKNTLCKNQS  240
QSNIDNVNGL DSSRNPAAQF NLHQESNGND TQNLQPLHNS EDVSANTIAV NGSSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-221772341875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019157013.11e-137PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LHF03e-62ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBLA0A328D6381e-90A0A328D638_9ASTE; Uncharacterized protein
STRINGXP_009620291.15e-91(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.12e-63homeobox protein 34
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]