PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000711.1_g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TCP
Protein Properties Length: 419aa    MW: 43987.5 Da    PI: 8.1039
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000711.1_g00010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.28.4e-4095201389
                      TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsss 87 
                              ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  ++  +ss+ + s+
  Itr_sc000711.1_g00010.1  95 VAKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVPLRSSGTTISA 180
                              689*****************************************************************988644444444442222 PP

                      TCP  88 g...................k 89 
                              +                   +
  Itr_sc000711.1_g00010.1 181 PatksgplfihggatamlgfH 201
                              222233344444444444431 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.6E-37100208IPR005333Transcription factor, TCP
PROSITE profilePS5136928.705100154IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MDFMEPHSNK SSGSGNGNGA ASTNNTSDHH NHHHRPTPPA NQEPPPSSLQ LVPHISQPDP  60
AGPGSGKAPA TQPRDPFMGS ISTQNATNNT NSKVVAKKPS KDRHTKVDGR GRRIRMPALC  120
AARVFQLTRE LGHKSDGETI EWLLQQAEPA IIAATGTGTI PANFSTLNVP LRSSGTTISA  180
PATKSGPLFI HGGATAMLGF HHQFSTAGYG HDPDENFMKK RLREDTSGAT SPSAAKPDRT  240
GVQGHEPGAD SIPGSSQPSS FIPAPAMWAV APAAGNVGNT FWMLPVSGGG GATTATVGVA  300
AAAAQQEQHQ FLHYKGSAAG MQRIGGFEFP GSARFSPVQL GSMVLQQPQP VQQLGLGVSE  360
TNMGMLASIN AYSGGGSRVD LGMNLEQQQQ HHHHQQHHQH HQNQPQTSDS GDENPTASQ
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019199658.10.0PREDICTED: transcription factor TCP23-like
SwissprotQ9C5182e-71TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A1S4D6B71e-174A0A1S4D6B7_TOBAC; transcription factor TCP23-like
STRINGXP_009624724.11e-173(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.12e-55TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]