PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000579.1_g00012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family G2-like
Protein Properties Length: 291aa    MW: 31459.2 Da    PI: 7.1334
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000579.1_g00012.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.81.6e-30101154155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Itr_sc000579.1_g00012.1 101 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 154
                              59*******************.********************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-2098158IPR009057Homeodomain-like
PROSITE profilePS5129411.05998157IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-30100159IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-24102154IPR006447Myb domain, plants
PfamPF002491.1E-7104153IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MREEDSNRFA FAKWEDELPS PEELMPLSQT LISPDLALAF DIRNPGNTAA VPPQSHHHAP  60
APPVSAVHTP SSQPNSSAEF DSGEMGGGGA AGDEPARTLK RPRLVWTPQL HKRFVDAVAH  120
LGIKNAVPKT IMQLMSVDGL TRENVASHLQ KYRLYLKRMQ GLSNGGSGAG NNSGAGAGDP  180
ATDHLFASSP VPAHFLHPGR PNSEHFMPFV NIPAMQHHQQ MAAVLHPPYR HFGSPPNAQF  240
ENPFVSRQSQ QRMGTPVHNR SPVAPPYAVD DVESAAANAR KVLTLFPTGD D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-32101157157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150398e-56AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019162796.11e-156PREDICTED: transcription factor PCL1-like
SwissprotO222101e-58MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A1S4AUN41e-129A0A1S4AUN4_TOBAC; transcription factor PCL1-like
TrEMBLA0A1U7XDB21e-129A0A1U7XDB2_NICSY; transcription factor PCL1-like
STRINGXP_009790047.11e-130(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24322354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.11e-85G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]