PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000509.1_g00016.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 789aa    MW: 89911.8 Da    PI: 6.1387
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000509.1_g00016.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR189.64.5e-2879174291
                     FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 
                              fYn YA++vGFs+r+s s++s+r+g i++r fvC k+g+r ++ k        + +r+r+etr+gCka+l vk ++ +gkw v+ +
  Itr_sc000509.1_g00016.1  79 FYNCYARRVGFSTRVSMSRRSRRDGAIIQRSFVCAKQGFRVDKAKPscdgdGGRVKRPRVETRVGCKAMLLVKIQEeSGKWIVAGF 164
                              9*****************************************999999998889999*****************999********* PP

                     FAR1  82 eleHnHelap 91 
                                eHnHel+p
  Itr_sc000509.1_g00016.1 165 IREHNHELVP 174
                              ********86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-2679174IPR004330FAR1 DNA binding domain
PfamPF105511.0E-33295387IPR018289MULE transposase domain
PfamPF044341.7E-9563608IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.62575611IPR007527Zinc finger, SWIM-type
SMARTSM005754.6E-6586613IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 789 aa     Download sequence    Send to blast
MEFEPMSMGN DVIEFDMIGI GGGVVDGAID IEHPIEDDDD DDRGGGAGVS VEIHARDGDM  60
NLEPCEGMEF ESEEAAKAFY NCYARRVGFS TRVSMSRRSR RDGAIIQRSF VCAKQGFRVD  120
KAKPSCDGDG GRVKRPRVET RVGCKAMLLV KIQEESGKWI VAGFIREHNH ELVPPDKVHC  180
LRSHRHVSGA AKALIDTLQG AGMGASGIMS ALIKEYGGIN NIGFTERDCR NYMKSSKQRT  240
LGGDPKILLD YLKQKHAENP AFLYAVQGDE DQCMSNVFWA DPNARNSYTY FGDTVTFDTT  300
YRSNRYRLPF AMFTGVNHHR QPVLFGCAFL PNESEESFVW LFKTWLTAMS GKPPVSITTD  360
HDRLIRLAVT QVFPETRHRF CMWHIFKECQ EKLSDVLSKH PNFEAEFYKC VSVTESIEEF  420
ESCWLSLIDR YDLRENEWLK TIFADRGQWV PVYLRNTFFA EMSMTQHSDS LNSYFDGYMN  480
ASTTLQQFVK QYEKALESRY EKEVKADYDS INTAPVLKTP SPMEKQASEI YTRKLFAKFQ  540
GELVETLGFL ATKVEDQELI TTYQVSKFGE SQKSYLVRYN VGDMKALCSC QMFEFCGILC  600
RHILTVFRIT NLLTLPSQYI LKRWTKNAKS SVMLDEGTNN SLNSCRESLT QRYNNLQNEA  660
LRYVDESAGD EEIYNVALDA LREAANKVAI AKRNSDKLSI INGPGDIQES TISLSHANTR  720
SQDHQLDPEK PLPLDEQDRK IQSLSRQLEH AEQKCEAYRA NLLSILKDIE QQKLQLMVKV  780
QNIKFGLKD
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019177388.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_019177389.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2N9J6X60.0A0A2N9J6X6_FAGSY; Uncharacterized protein
STRINGXP_009775261.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]