PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000501.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bZIP
Protein Properties Length: 175aa    MW: 20670.1 Da    PI: 5.8812
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000501.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.51.8e-1581131555
                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                              +++rr+++NRe+ArrsR RK++ ++eL   v  L +eN++L ++l++ ++ 
  Itr_sc000501.1_g00003.1  81 RKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLLEKLNHVSER 131
                              689*******************************************98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.0E-1577141IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.40479142IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.7E-1281154No hitNo description
PfamPF001703.5E-1381133IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.18E-1381131No hitNo description
CDDcd147025.77E-2082133No hitNo description
PROSITE patternPS0003608499IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MQPIEITELN YLLPPNQSLY PTHFGMSHNT PEFQLSRLCN PPYYLQIAPN VQELNSKATC  60
FSSNSTSDEA DEQQLSLIIE RKQRRMISNR ESARRSRMRK QKHLDELWSQ VVWLRNENHQ  120
LLEKLNHVSE RHDQVIQENG QLKEENSELR QMITELQLNS PYPSLKDLDG DNFHD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193100RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00389DAPTransfer from AT3G30530Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019176344.11e-121PREDICTED: basic leucine zipper 43-like
SwissprotQ9FMC21e-41BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A4D9BU752e-84A0A4D9BU75_SALSN; Uncharacterized protein
STRINGXP_009603686.13e-80(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9472492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.11e-49basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]