PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000436.1_g00029.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 176aa    MW: 18918.2 Da    PI: 4.8629
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000436.1_g00029.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.2e-182169355
                      AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             y+GVr++k +g+Wv+eIr p   g ++r++lg+++t+e+Aa+a++ a+  ++g
  Itr_sc000436.1_g00029.1 21 YRGVRRRK-WGKWVSEIRAP---GTKTRIWLGSYDTPEMAAAAYDVAAFHFKG 69
                             9****998.**********8...325*********************987765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-212078IPR016177DNA-binding domain
SMARTSM003801.3E-302083IPR001471AP2/ERF domain
PROSITE profilePS5103222.6162077IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-292078IPR001471AP2/ERF domain
PfamPF008478.5E-122166IPR001471AP2/ERF domain
CDDcd000181.48E-182179No hitNo description
PRINTSPR003675.5E-102132IPR001471AP2/ERF domain
PRINTSPR003675.5E-104359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MEEPCNSAGG DSPAAAAGGM YRGVRRRKWG KWVSEIRAPG TKTRIWLGSY DTPEMAAAAY  60
DVAAFHFKGF AVRLNFPDLV DGFPKPASSS AEDVRLAAQE AAMRFKRPAA AAPAAETPSR  120
SGGPAAVRVG LSESQIEAIN ETPMDSPSAI WMQLGTSRED LEGDWVEMHT DSIWDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-141681167ATERF1
3gcc_A1e-141681167ATERF1
5wx9_A4e-141077472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019155540.14e-97PREDICTED: ethylene-responsive transcription factor ERF022-like
SwissprotQ9LQ285e-45ERF22_ARATH; Ethylene-responsive transcription factor ERF022
TrEMBLA0A484KYK36e-66A0A484KYK3_9ASTE; Uncharacterized protein
STRINGGorai.005G116500.12e-58(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.11e-44ERF family protein