PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000422.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 866aa    MW: 98224.2 Da    PI: 6.8345
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000422.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR146.71.1e-1456129289
                     FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                              fY+eY+k++GF++r+s+  + k + + t r+f C + g ++++ ++              C a+l+++++ ++kw+vtk+  +HnH
  Itr_sc000422.1_g00009.1  56 FYDEYSKRMGFRIRVSHFGRLKADVSSTFRDFLCARDGLKKRTGET--------------CGAMLRIELKGKNKWVVTKFLRDHNH 127
                              9**************************************9998777..............************************** PP

                     FAR1  88 el 89 
                              ++
  Itr_sc000422.1_g00009.1 128 SI 129
                              97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-1156129IPR004330FAR1 DNA binding domain
PfamPF105511.7E-25264355IPR018289MULE transposase domain
PfamPF044343.9E-11530576IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.103542578IPR007527Zinc finger, SWIM-type
SMARTSM005753.2E-8553580IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 866 aa     Download sequence    Send to blast
MDVEVIDVEE GNMGQHDGVT DDGDDELSES STQDVNRAVE PHLGMEFHSE DAAKTFYDEY  60
SKRMGFRIRV SHFGRLKADV SSTFRDFLCA RDGLKKRTGE TCGAMLRIEL KGKNKWVVTK  120
FLRDHNHSIE SPNNVHYLRH TAMTTKVATE NSLAGLVPSG VMYVSVDGSH APIEMNHGVK  180
NCRTADSDRL TKNTTTLIYA PKQYNQRRTL GRDAHSLLDY FKKMQAENPG FYYAIQLDED  240
NRMANVFWAD SRSRNAYSHF GDAVTLDTTY RVKQCKVPFA PFTGVNHHGQ SILFGCALLL  300
DESEATFVWL FKTFLAAMNN HAPISITTDQ DRAIQSAVAQ VFPETCHCIN KWDVLRQGQE  360
KMAPVCIMHP NFQVELYNCI NMTETVEEFE LCWDSILRKY DLQKNDWLHS IYNVRQRWAP  420
VYFRASFFAA IASNQGSESS FFDGYVNQQT TLPIFIRQYE AALENSFEKE IESDFETTCT  480
TPVPRTPSPM EKQAANLYTR WIFAKFQVEL VETFVYTANM IDGDGTVSMY RVAKFEDDSK  540
AYIVSLNCSD MKAKCSCQMF EYSGILCRHI LTVFTVTNVL TLPSHYILKR WTRNAKSVVG  600
SDECGERHSN ESMTARYNSL CREAIRYAEE GALAPETYNV ALSALKEAKK KVSAAKKNVA  660
RVIPPNSQVS GVYDDRRSSS SAPDMNPILW PCQDEMIKRF NLNVSVPSKP VTDLNIPRMA  720
PVSVHRDDGH TDNMVSLPCL KSMTWVMENK SSTPANRVAV INLKLQDYSR STPQESEVKF  780
QLSKVTLEPM LKSMAYISEQ LSTANRVAVI NLKLQDTETT SGESEVKFQV SRDTLGAMLR  840
SMAYIREQLS NTVEPQVETP SKKQRK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019197789.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1
RefseqXP_019197790.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A1U7WFV10.0A0A1U7WFV1_NICSY; protein FAR1-RELATED SEQUENCE 3 isoform X1
STRINGXP_009776131.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]