PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000420.1_g00011.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family E2F/DP
Protein Properties Length: 358aa    MW: 38900.2 Da    PI: 6.6422
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000420.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.11.2e-27100182271
                  E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwk 70 
                              ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wk
  Itr_sc000420.1_g00011.1 100 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpnnnlsspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWK 181
                              689********...*****999*******************************************************.*******9 PP

                  E2F_TDP  71 g 71 
                              g
  Itr_sc000420.1_g00011.1 182 G 182
                              8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094047.6E-1304353IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.104.9E-4795187IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013729.6E-3699182IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.3E-25101182IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467859.79E-22102183IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144582.42E-41187290IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.07E-41189301No hitNo description
SMARTSM011386.2E-70189351IPR014889Transcription factor DP, C-terminal
PfamPF087815.5E-40190299IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MVNNHEDGEK NPSRGGNSRG AGGGGGATRS WSTTVSGQSV STSGSVGSPS SRSEAAIATP  60
ASENTFARVT SLDNHADDAG SLGAAGKKKR GQRAAGGDKS GRGLRQFSMK VCEKVESKGR  120
TTYNEVADEL VAEFADPNNN LSSPDQQQYD EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW  180
KGLPRTSIND IEELKTERLG LRNRIDKKAA YLEELEEQYA GLQNLMKRNE QLYSSGNTPS  240
GGVALPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNYVLKAM NFCGRPKDDS  300
VPQNLPADGG EGSSMPNMFQ LQIPNPPIQN ISGRPPTSPP LPGILKARVK HEHPPPST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B8e-4193187193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019162488.10.0PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY21e-159DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2G9FZK60.0A0A2G9FZK6_9LAMI; E2F-like protein
STRINGXP_010241817.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62652435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-120Transcription factor DP