PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000343.1_g00019.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 317aa    MW: 35178.1 Da    PI: 4.9407
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000343.1_g00019.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY901.9e-28136194259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              +D+++WrKYGqK++kgs++prsYYrC+s+ gC ++k+ve+s++   ++++tY+ eH h+
  Itr_sc000343.1_g00019.1 136 EDKWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVEQSNTAAGMFIVTYTAEHSHS 194
                              8**************************998****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-29121196IPR003657WRKY domain
PROSITE profilePS5081130.836130196IPR003657WRKY domain
SuperFamilySSF1182905.89E-25132196IPR003657WRKY domain
SMARTSM007742.5E-34135195IPR003657WRKY domain
PfamPF031061.3E-24136193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGECIGFEDN WGLQAIVQPP LMASEFSCHD LFDFSQENVL NFDGFVGSAM VSNDALLEEL  60
YKPFYQPAAS ISFAGEVKQA EAAVHQILQK DGDVKKGSLD KSSPDLETPN YVPKFKRRKN  120
EHKRVVVQVP AEELCEDKWA WRKYGQKPIK GSPYPRSYYR CSSSKGCLAR KQVEQSNTAA  180
GMFIVTYTAE HSHSQPTRRN SLAGTIRNKF PPSTASKAVK VAEDSSTTAH HVPELVAAAS  240
ALSSPTDNNW RACSEEETKI KDEDDDEEEL ELGEKISLSD QIQSGMPPQV AMDNNTEDFF  300
ADHAAVITPN ESLNHSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-17126197880Disease resistance protein RRS1
5w3x_D1e-17126197880Disease resistance protein RRS1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019151225.11e-157PREDICTED: WRKY transcription factor 22-like isoform X1
RefseqXP_019151226.11e-157PREDICTED: WRKY transcription factor 22-like isoform X2
TrEMBLA0A484KQQ48e-70A0A484KQQ4_9ASTE; Uncharacterized protein
STRINGXP_009764282.16e-64(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57812335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.16e-32WRKY DNA-binding protein 27