PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000341.1_g00027.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ZF-HD
Protein Properties Length: 299aa    MW: 32906.6 Da    PI: 8.2519
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000341.1_g00027.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer110.78e-3544100358
              ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                              +v+YkeClkNhAas+GghavDGCgEfmp+++++ +++++lkCaACgCHRnFHRre+ 
  Itr_sc000341.1_g00027.1  44 AVVYKECLKNHAASMGGHAVDGCGEFMPAPDATpADPTSLKCAACGCHRNFHRREPP 100
                              689******************************9********************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.1E-294599IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-2045104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.334798IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.3E-304798IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.0E-29164233IPR009057Homeodomain-like
SuperFamilySSF466895.95E-19165232IPR009057Homeodomain-like
TIGRFAMsTIGR015653.5E-27171228IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDLTTSPTTK TPDSENDTPP QPRLKPLSFT NGAAVNRKQA PAPAVVYKEC LKNHAASMGG  60
HAVDGCGEFM PAPDATPADP TSLKCAACGC HRNFHRREPP DDYSFSSPTH ISSPHFIDFR  120
HPFRRRSSPS PSPPPPPPPQ HMLLALATPP DNHHLTPVTP TAVKHENTAG RKRFRTKFTQ  180
EQKEKMHNFS EKLGWKLQKS DEVSVERFCN EIGVSRGVLK VWMHNNKNTL GKKDNVSNGG  240
FNVIINGGET VKNDAVENNN NSNSFNNDDH NASSNHCRND QNMCGGDDLN LHISAPTNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-241722291875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019165668.11e-162PREDICTED: zinc-finger homeodomain protein 11-like
SwissprotQ9SEZ11e-65ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLA0A314KKG88e-93A0A314KKG8_NICAT; Zinc-finger homeodomain protein 9
STRINGXP_009788342.13e-90(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.14e-58homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]