PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000214.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 313aa    MW: 33420.8 Da    PI: 7.5598
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000214.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.3e-1859108255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aa+a+++a+  l+g
  Itr_sc000214.1_g00005.1  59 KYRGVRQRS-WGKWVAEIREPKK---RTRRWLGTFATAEDAARAYDRAAIVLYG 108
                              7*****999.**********965...5999******************988776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.14E-2159116No hitNo description
SuperFamilySSF541717.85E-2159116IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.6E-3059116IPR001471AP2/ERF domain
SMARTSM003801.3E-3859122IPR001471AP2/ERF domain
PROSITE profilePS5103222.39259116IPR001471AP2/ERF domain
PfamPF008471.6E-1159108IPR001471AP2/ERF domain
PRINTSPR003672.9E-106071IPR001471AP2/ERF domain
PRINTSPR003672.9E-108298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006970Biological Processresponse to osmotic stress
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009744Biological Processresponse to sucrose
GO:0009749Biological Processresponse to glucose
GO:0010119Biological Processregulation of stomatal movement
GO:0010353Biological Processresponse to trehalose
GO:0010449Biological Processroot meristem growth
GO:0010896Biological Processregulation of triglyceride catabolic process
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0032880Biological Processregulation of protein localization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048527Biological Processlateral root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MATHHEINPN IHNSITPPQP PTSNAANLEC NAAAAPSGEG GGKRGGGKGR GGPDNSKFKY  60
RGVRQRSWGK WVAEIREPKK RTRRWLGTFA TAEDAARAYD RAAIVLYGSK AQLNLQPSGN  120
SDDGSSSSSQ SSKRSTAYST QNLRPILPKP PGFGLVPPSA AAGGGGGAYI PYAFTPTLQY  180
PPEILQQYSL QLPQPPQQPP FRSSEAIVLC NSNPNPNPNP TPAPNPNHPE SDPQTQQQDD  240
FSFYDEMNSL VGSVGSSLSL SSTMAAAPAF GSPGSPMFWP TGEDGFGGSS IWDYPNVDQY  300
QLFDFNQDNL GKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1760115359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14046GGKRGGG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019151027.11e-119PREDICTED: ethylene-responsive transcription factor ABI4
TrEMBLA0A328E3X31e-64A0A328E3X3_9ASTE; Uncharacterized protein
STRINGVIT_13s0067g01400.t012e-50(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.18e-25ERF family protein