PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000189.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TCP
Protein Properties Length: 254aa    MW: 27034.2 Da    PI: 10.2441
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000189.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.91.8e-3842129288
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 
                              a+k+++++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++t++WLlqqa+pai+++tgt++++as+   a++ s+s++  s
  Itr_sc000189.1_g00008.1  42 APKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKTDGETVQWLLQQAEPAIIAATGTGTIPASALaAAAEASVSEQGTS 127
                              789******************************************************************88873333333333333 PP

                      TCP  87 sg 88 
                               +
  Itr_sc000189.1_g00008.1 128 VS 129
                              32 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.3E-3247136IPR005333Transcription factor, TCP
PROSITE profilePS5136927.79148102IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MAGNKPAEIK DLQILSSHNT KDQPQPQPQP QPQENNKKLQ VAPKRSSNKD RHKKVDGRGR  60
RIRMPALCAA RIFQLTRELG HKTDGETVQW LLQQAEPAII AATGTGTIPA SALAAAAEAS  120
VSEQGTSVSA SLHEFAGIRS HWAVMGGANN LSRPQISSAA AAAWPSVPGF APGFSGNQIL  180
NSIPKFGFHG FEFPNPGTFT QHLPGLELGL SQEGRIGSVN FQAVPQSYQM GTGNNPMNQQ  240
HPGTGRDESQ GPGQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019199844.11e-144PREDICTED: transcription factor TCP20-like
SwissprotQ9LSD57e-61TCP20_ARATH; Transcription factor TCP20
TrEMBLA0A068UY751e-89A0A068UY75_COFCA; Uncharacterized protein
STRINGEOX997384e-80(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.15e-59TCP family protein
Publications ? help Back to Top
  1. Zhu P, et al.
    Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
    [PMID:27708161]
  2. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  3. Guan P, et al.
    Interacting TCP and NLP transcription factors control plant responses to nitrate availability.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424
    [PMID:28202720]
  4. Guan P
    Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 1697
    [PMID:29033968]
  5. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  6. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  7. Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K
    Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis.
    Microbes Environ., 2017. 32(4): p. 314-323
    [PMID:29187692]