PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000116.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TCP
Protein Properties Length: 429aa    MW: 48123.4 Da    PI: 7.4978
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000116.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.87.7e-38801882132
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsss 87 
                              +gkkdrhski+T++g RdRR+Rls+++a++fFdLqd LGfdk+sktieWL+ ++k aik+l++t+++++  +              
  Itr_sc000116.1_g00007.1  80 PGKKDRHSKICTARGVRDRRMRLSLQIARKFFDLQDTLGFDKASKTIEWLFSKSKNAIKDLMRTKNIKSAGF-------------- 151
                              69**************************************************************77777222.............. PP

                      TCP  88 gkaaksaakskksqksaasalnlakesrakarararertrekmri 132
                                       s++++ +  s     kesr++arararert ek+++
  Itr_sc000116.1_g00007.1 152 --------VSSSDEYEVGSITPATKESRQEARARARERTMEKKKK 188
                              ........45567778888889999****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.6E-3681155IPR005333Transcription factor, TCP
PROSITE profilePS5136935.47282140IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.896168185IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MFPTNHENPF PYPYDHPQNP QNPSSRHHDL DQQPPPFLLH DDSPLSQVFS QPPPPLAAGA  60
AAGDHKAKKG GGGPSRKRNP GKKDRHSKIC TARGVRDRRM RLSLQIARKF FDLQDTLGFD  120
KASKTIEWLF SKSKNAIKDL MRTKNIKSAG FVSSSDEYEV GSITPATKES RQEARARARE  180
RTMEKKKKMM IRGLENSSPS SLDQLGSSSN SPFLEESCCQ EIKSNNTCPD LAQSFSKQYL  240
GDEEIRSNNA CTDLAQWFSR QYLREEEIMS NNVCTDLAQW SGKQYLEEAE IMSNNTCTDL  300
AQSFSRQQYL RKEEIRSNNT CTDLAQRFSK RYSGEEEIRS NNAPLGFENQ FASSVGIKEN  360
YHQDNGESFM GFLGNWDLAG AGPGAGISPY THGLDPFPGI NPSTTLYFGA TSLPLDQERQ  420
FSCNHYSLG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019165084.10.0PREDICTED: uncharacterized protein LOC109161180
TrEMBLA0A3Q7GNB61e-47A0A3Q7GNB6_SOLLC; Uncharacterized protein
STRINGSolyc04g006980.1.12e-48(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24362359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.15e-29TCP domain protein 12