PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000088.1_g00024.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 129aa    MW: 14387.2 Da    PI: 5.3432
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000088.1_g00024.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.3e-191363255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +y+GVr ++ +g++ +eIrd  + ng   r++lg+++taeeAa+a+++a+  ++g
  Itr_sc000088.1_g00024.1 13 KYRGVRKRP-WGKYGVEIRDS-NrNG--VRVWLGTYDTAEEAARAYDRAAYGMRG 63
                             8********.**********4.4254..**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.9E-131363IPR001471AP2/ERF domain
PROSITE profilePS5103222.8531371IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-291372IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-221372IPR016177DNA-binding domain
CDDcd000185.94E-181371No hitNo description
SMARTSM003802.4E-311377IPR001471AP2/ERF domain
PRINTSPR003679.9E-121425IPR001471AP2/ERF domain
PRINTSPR003679.9E-123753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MEEARRKNSE EVKYRGVRKR PWGKYGVEIR DSNRNGVRVW LGTYDTAEEA ARAYDRAAYG  60
MRGKFAVLNF PGEYPTTLNG SCSPATTMPP FGGSSLPPGM GFVERETAAK EVIEFECLDD  120
KLLEELLAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-309741075Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019165192.12e-53PREDICTED: ethylene-responsive transcription factor ERF095-like
SwissprotQ9LTC53e-35ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A059D1V21e-41A0A059D1V2_EUCGR; Uncharacterized protein
STRINGXP_010039174.12e-42(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.15e-23ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]