PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000077.1_g00020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TCP
Protein Properties Length: 255aa    MW: 26970.3 Da    PI: 10.5223
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000077.1_g00020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.93.7e-3833125389
                      TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsss 87 
                              +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++  ++s ++s+s  + 
  Itr_sc000077.1_g00020.1  33 VKKPPAKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFStVSVSVRNSSS--TT 116
                              79******************************************************************88832222222222..11 PP

                      TCP  88 g.......k 89 
                              +       +
  Itr_sc000077.1_g00020.1 117 SpsisaplD 125
                              111212221 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-3438126IPR005333Transcription factor, TCP
PROSITE profilePS5136927.6753892IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MSTSAEANGA IIDPKQRQQQ QQQPPPSNGA LVVKKPPAKD RHSKVDGRGR RIRMPIVCAA  60
RVFQLTRELG HKSDGQTIEW LLRQAEPSII AATGTGTIPA SFSTVSVSVR NSSSTTSPSI  120
SAPLDQKPSH SLISSAPFIL GKRLRSEEDG LDGGGNKDDV AGTATVVGPT AGFWAIPPRP  180
DFGQVWSFAA APHEMVVPTP ALNSHPSRFL QQQMGEASAA RVGNYLPIAQ GHLNLLASLS  240
GPPPPSSGRR DDDGR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019187993.11e-146PREDICTED: transcription factor TCP7-like
SwissprotQ9FMX22e-93TCP7_ARATH; Transcription factor TCP7
TrEMBLG3BGV41e-130G3BGV4_SOLLC; TCP transcription factor 14
STRINGSolyc04g009180.1.11e-130(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39512242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.18e-82TCP family protein