PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000071.1_g00073.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 185aa    MW: 20414.1 Da    PI: 9.6417
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000071.1_g00073.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.13.4e-1664114255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr++  +g+++AeIrdp ++g  +r +lg++ t eeAa a+++a+ +l+g
  Itr_sc000071.1_g00073.1  64 RYRGVRRRQ-WGKFAAEIRDPAKGG--ARRWLGTYLTSEEAALAYDRAAFELRG 114
                              8*****887.**********97765..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.37E-2963124No hitNo description
PfamPF008476.8E-1164114IPR001471AP2/ERF domain
PROSITE profilePS5103223.73664122IPR001471AP2/ERF domain
SMARTSM003802.8E-3464128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-2864123IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-2164123IPR016177DNA-binding domain
PRINTSPR003678.8E-136576IPR001471AP2/ERF domain
PRINTSPR003678.8E-13104124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MASWEYDLAI LDSMDHYILH HLGDDLPPEF TFSETGSLSS GVTGNNAAAT KDDSAPAPET  60
EWKRYRGVRR RQWGKFAAEI RDPAKGGARR WLGTYLTSEE AALAYDRAAF ELRGSKALLN  120
FPALASSSGL PEPVRVKRQK PKPRLEHGSC TLKKTKINNV LNSLASATAK LGSQTMLKMF  180
QESSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-2863128469ATERF1
3gcc_A8e-2863128469ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019158803.14e-88PREDICTED: ethylene-responsive transcription factor 1A-like
SwissprotQ8L9K14e-35ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A2G9HT348e-35A0A2G9HT34_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-37ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]