PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000065.1_g00036.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TCP
Protein Properties Length: 345aa    MW: 39178.9 Da    PI: 9.5071
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000065.1_g00036.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP149.42.3e-461032332136
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsss 87 
                              +gkkdrhski+T++g RdRR+Rls+++a++fFdLqd+LGfdk+s+tieWLl q+k+aikel  t +s++++ +  ss+s+ +   +
  Itr_sc000065.1_g00036.1 103 TGKKDRHSKICTAQGVRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSQSKTAIKELKITAASKHNNGS--SSESECE---A 183
                              79**************************************************************555553331..1122222...1 PP

                      TCP  88 gkaaksaa.kskksqksaasalnlakesrakarararertrekmriknkl 136
                               + + +++ +s+  +++++++ +++kesr+karararert+ekm++k+++
  Itr_sc000065.1_g00036.1 184 MSTMDENEeNSNTVESKNKKVCKKKKESREKARARARERTKEKMMTKTQN 233
                              22222233244444444444588899********************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.8E-41103229IPR005333Transcription factor, TCP
PROSITE profilePS5136937.199105163IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.397209226IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MFPTTKNPLP FSTETTTLLK RPFPFPFPFP WDHQNPSFNS QEEPPFFLQF PSPFLDDQIM  60
PLNQIFSHHP TGETAPLNSV KISSPTTKTK KKTLQGSTPR RRTGKKDRHS KICTAQGVRD  120
RRMRLSLQIA RKFFDLQDML GFDKASNTIE WLLSQSKTAI KELKITAASK HNNGSSSESE  180
CEAMSTMDEN EENSNTVESK NKKVCKKKKE SREKARARAR ERTKEKMMTK TQNLINPFPD  240
QESIANSYTQ ENTSSHEGIE THFASSLGIT EKYIFQYHDV HHNIINNAAP ISSEGTIDPT  300
NNTFMGFLGN WDPFSGNPSG SAYLGATNLH FQPMVQENNF SSNQY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019180050.10.0PREDICTED: transcription factor TCP12-like
TrEMBLM1ABX26e-76M1ABX2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000193241e-76(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24362359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.13e-33TCP domain protein 12