PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000065.1_g00030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family RAV
Protein Properties Length: 366aa    MW: 40791.9 Da    PI: 9.7115
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000065.1_g00030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.37.8e-1362110155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s++kGV   + +grW A+I++      ++r++lg+f  +eeAa+ ++ a+++++g
  Itr_sc000065.1_g00030.1  62 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARVYDIAAQRFRG 110
                              689***9788.8*********3.....5*************************98 PP

2B3101.45.2e-32189289196
                              EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                              f+k+ tpsdv+k++rlv+pk+ ae+h     g ++ +++ l +ed++g++W+++++y+++s++yvltkGW++Fvk++ Lk+gD+v 
  Itr_sc000065.1_g00030.1 189 FEKAVTPSDVGKLNRLVIPKQQAEKHfplqnGAVTSKGVLLNFEDTNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLKAGDIVS 274
                              89*****************************99999************************************************** PP

                              EEE-SSSEE..EEEE CS
                       B3  82 Fkldgrsefelvvkv 96 
                              F+++   e++l++ +
  Itr_sc000065.1_g00030.1 275 FHRSTGPEKQLYIDW 289
                              **8766777777766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.22E-1662118IPR016177DNA-binding domain
CDDcd000181.20E-2462117No hitNo description
PfamPF008472.9E-762110IPR001471AP2/ERF domain
SMARTSM003801.0E-2863124IPR001471AP2/ERF domain
PROSITE profilePS5103219.75763118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-1963118IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.2E-42178294IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-32184290IPR015300DNA-binding pseudobarrel domain
CDDcd100171.12E-29187278No hitNo description
PfamPF023622.2E-28189290IPR003340B3 DNA binding domain
SMARTSM010195.9E-26189293IPR003340B3 DNA binding domain
PROSITE profilePS5086314.128189293IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDASTPSSID ESSSSDSMSV ALNLPPATKS PESLCRMGSG ASVIIDAENG VEAESGRKLP  60
SSRFKGVVPQ PNGRWGAQIY EKHQRVWLGT FNEEEEAARV YDIAAQRFRG RDAVTNFKPL  120
SETTANGDDY EAVFLSSHSK AEIVDMLRKH TYADELEQSR RAFNINNNNN MSARKPEADR  180
SAKSRERLFE KAVTPSDVGK LNRLVIPKQQ AEKHFPLQNG AVTSKGVLLN FEDTNGKVWR  240
FRYSYWNSSQ SYVLTKGWSR FVKEKSLKAG DIVSFHRSTG PEKQLYIDWK PRNGTGSDIP  300
VHPVQVFRLF GVNILSKSST VVSPMAMAAM DTTNNISSCS GGKRIREVME FLPLECSKKQ  360
RVIDAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-5918629811123DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019181230.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotP822801e-144RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLA0A484LNG30.0A0A484LNG3_9ASTE; Uncharacterized protein
STRINGEOY021361e-174(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29582453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-144related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]