PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_80197.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 279aa    MW: 29866.3 Da    PI: 7.0271
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_80197.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-17131180355
           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   ++GVr ++ +g+++AeIrd + ng   r++lg+f+++e Aa a+++a+ +++g
  MLOC_80197.1 131 FRGVRKRP-WGKFAAEIRDSTRNG--VRVWLGTFDSPEAAALAYDQAAFAMRG 180
                   89******.**********44465..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-28130189IPR001471AP2/ERF domain
SMARTSM003801.4E-34130194IPR001471AP2/ERF domain
PROSITE profilePS5103222.484130188IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-21131189IPR016177DNA-binding domain
CDDcd000187.59E-17131190No hitNo description
PfamPF008471.8E-12131180IPR001471AP2/ERF domain
PRINTSPR003674.5E-9131142IPR001471AP2/ERF domain
PRINTSPR003674.5E-9154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MSGPSSTASS SSTSPRLTAG VVSFLARRAM TTQNHQRAAA FLHSPGSSTG SADTAPWHHR  60
APATPPPLLP FDANDADEML LLDMLSQHQQ EDMHTATAPV PATTAATAVK REAREEEEEA  120
KVAVGGSGRA FRGVRKRPWG KFAAEIRDST RNGVRVWLGT FDSPEAAALA YDQAAFAMRG  180
GAAVLNFPAD QVRRSLEGAE DDVCGRADGL SPVLALKRRH SMHRRAATKR KAMPARPGRP  240
EGVMELEDLG AEYLEELLGA SDDMTTSASN SWCSSYHSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-25127188263ATERF1
3gcc_A4e-25127188263ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559098.18e-88PREDICTED: ethylene-responsive transcription factor 1B-like
TrEMBLM0ZAC90.0M0ZAC9_HORVD; Uncharacterized protein
STRINGMLOC_80197.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-36ethylene response factor 1