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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_80197.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | ERF | ||||||||
Protein Properties | Length: 279aa MW: 29866.3 Da PI: 7.0271 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.4 | 1.5e-17 | 131 | 180 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +g+++AeIrd + ng r++lg+f+++e Aa a+++a+ +++g MLOC_80197.1 131 FRGVRKRP-WGKFAAEIRDSTRNG--VRVWLGTFDSPEAAALAYDQAAFAMRG 180 89******.**********44465..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-28 | 130 | 189 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-34 | 130 | 194 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.484 | 130 | 188 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.88E-21 | 131 | 189 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.59E-17 | 131 | 190 | No hit | No description |
Pfam | PF00847 | 1.8E-12 | 131 | 180 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-9 | 131 | 142 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-9 | 154 | 170 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MSGPSSTASS SSTSPRLTAG VVSFLARRAM TTQNHQRAAA FLHSPGSSTG SADTAPWHHR 60 APATPPPLLP FDANDADEML LLDMLSQHQQ EDMHTATAPV PATTAATAVK REAREEEEEA 120 KVAVGGSGRA FRGVRKRPWG KFAAEIRDST RNGVRVWLGT FDSPEAAALA YDQAAFAMRG 180 GAAVLNFPAD QVRRSLEGAE DDVCGRADGL SPVLALKRRH SMHRRAATKR KAMPARPGRP 240 EGVMELEDLG AEYLEELLGA SDDMTTSASN SWCSSYHSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-25 | 127 | 188 | 2 | 63 | ATERF1 |
3gcc_A | 4e-25 | 127 | 188 | 2 | 63 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00374 | DAP | Transfer from AT3G23240 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003559098.1 | 8e-88 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
TrEMBL | M0ZAC9 | 0.0 | M0ZAC9_HORVD; Uncharacterized protein | ||||
STRING | MLOC_80197.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 1e-36 | ethylene response factor 1 |