PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_78521.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 84aa    MW: 9464.49 Da    PI: 8.9229
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_78521.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.13.2e-111760444
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     W+  E +l+ +a + +G g   +W++++r mg ++t+ ++++++
     MLOC_78521.1 17 WSVRENKLFEEALANYGEGtpdRWHKVSRAMGGTKTADEVRNHY 60
                     *******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.1941268IPR017884SANT domain
SMARTSM007173.0E-81366IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-61568IPR009057Homeodomain-like
SuperFamilySSF466899.31E-121671IPR009057Homeodomain-like
CDDcd001674.09E-61760No hitNo description
PfamPF002493.2E-91760IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MSSGSTSSSR GGANAVWSVR ENKLFEEALA NYGEGTPDRW HKVSRAMGGT KTADEVRNHY  60
EILEEDIKLI ESGRVPFPKY KYRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-23781274RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3739375e-85AK373937.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3048G15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458271.17e-35hypothetical protein SORBIDRAFT_03g030330
SwissprotQ58FS32e-24RAD_ANTMA; Transcription factor RADIALIS
TrEMBLM0Z7Q35e-57M0Z7Q3_HORVD; Uncharacterized protein
STRINGMLOC_78521.11e-56(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-24RAD-like 6