PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_77331.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 176aa    MW: 19108.9 Da    PI: 5.9613
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_77331.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.42.6e-083312255
                  HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   L+el+P++      K +Ka+iL +A+eY+ksLq
  MLOC_77331.1  3 ALQELVPHC-----NKSDKASILDEAIEYLKSLQ 31
                  79******8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.9E-11139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-11156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.65E-8135No hitNo description
PROSITE profilePS5088812.138130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-5331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MKALQELVPH CNKSDKASIL DEAIEYLKSL QLQVQIMWMT TGMTPMMYPG AHQLMSPMAV  60
GLNSACIPTA QSLSQLQKRV APFMNNHLPD QMPQVQSPAI DSLDVANQMQ NNGVCGEPRN  120
PFLHPDDTLT AASQLPGMLP YASQKAQQNQ NHQLLPSIDM PASGPCPPSF ADGTGK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228425.13e-88PREDICTED: transcription factor PIF4-like isoform X1
TrEMBLM0Z5731e-127M0Z573_HORVD; Uncharacterized protein
TrEMBLM0Z5761e-126M0Z576_HORVD; Uncharacterized protein
STRINGMLOC_77331.31e-126(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.17e-16phytochrome interacting factor 3-like 5