PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_76805.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 518aa    MW: 53387.2 Da    PI: 4.9482
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_76805.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.3e-11333375754
                   HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
           HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                   ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  MLOC_76805.2 333 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 375
                   79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-16323393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.764326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-14332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9332375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-16333388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.54E-13333380No hitNo description
CDDcd048731.25E-4451507No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MPAPLPEGDG HEQQGLGHEL PAAMGMMPMM GQEAGNHHDP HLLSMPTGGG GGFRAPSMLD  60
EDWYFGAGAV GDAAANGSMA LVPAAMEASG SSSGFGAGPQ MFPLLNLGCT GPFDVSGFDL  120
GSSGAGGGDF TAFLGAGNAS NTSPVSLLPH GSTGFLGSFA GFGTAPAQMT EFGGLAGFDL  180
FDTGAGGGGG SSSSSEGPAA PVSLTAPFSG RGKAAVLRPL EIFPPVGAQP TLFQKRALRR  240
NAGEEDDDKK RKAAAAAEGS ALSAGCDTIL DDADEDIGSI DASGLNYDSE DGRGVEESGR  300
KDGKESNANS TVTGGAAAEG KGKKKGMPAK NLMAERRRRK KLNDRLYMLR SVVPKISKMD  360
RASILGDAIE YLKELLHKIS DLQNELESSP SMPSLPPTPT SFHPLTPTLP ALPSRVKEEL  420
CPSALPSPTG QQPTVEVRLR EGQAVNIHML CPRRPGLVLS AMKAIESLGL DVQQAVISCF  480
NGFALDVFKA EQCKDGPGLQ PEEIKAVLLQ SAGFHPTM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1322340KKKGMPAKNLMAERRRRKK
2334341ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3591210.0AK359121.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1090B20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002449578.10.0hypothetical protein SORBIDRAFT_05g019530
SwissprotQ9LSE21e-114ICE1_ARATH; Transcription factor ICE1
TrEMBLM0Z4F30.0M0Z4F3_HORVD; Uncharacterized protein
STRINGMLOC_76805.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.48e-96bHLH family protein