PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_7649.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 259aa    MW: 29390 Da    PI: 7.3456
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_7649.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.78.5e-13171011098
                  HHHTT-EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  10 vlksgrlvlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  +++s+  +lp kfa+  +g +++  +++l+   +     W+v + ++  + +++l++G k+Fv+a++L+ g  +vF++dg  ++ l+vkvf+
  MLOC_7649.1  17 SFSSQ--RLPDKFAKLLDGREPR--EVKLREAGSgrgSLWDVVVVFDADG-HMYLERGRKQFVRAHDLRLGHLLVFSYDG--DAVLTVKVFD 101
                  44444..79*****888888555..67777633335599*****888876.567999********************988..4556999997 PP

2B338.81.7e-121582301486
                  T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
           B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldg 86 
                  + l +p +f e+hg+ k++  +++l+  +g  W v+l+++k+ g+    +++ GW +F  +n+Lk+gD++ F+  +
  MLOC_7649.1 158 QYLNVPLEFHEAHGYAKRS--KVVLR-MRGMDWAVNLKHNKRAGGktrSTFRYGWHQFLVDNRLKVGDICFFRALR 230
                  56889********999876..45555.599*******9966655556699**********************9543 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.7586103IPR003340B3 DNA binding domain
CDDcd100171.31E-127101No hitNo description
Gene3DG3DSA:2.40.330.101.6E-159105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.49E-159105IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.8E-89103IPR003340B3 DNA binding domain
PfamPF023621.7E-1018101IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-23137254IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.013143254IPR003340B3 DNA binding domain
PROSITE profilePS5086311.068145254IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-13153230IPR015300DNA-binding pseudobarrel domain
PfamPF023627.0E-10159230IPR003340B3 DNA binding domain
CDDcd100173.98E-9160232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDVLEVFEFF EIILENSFSS QRLPDKFAKL LDGREPREVK LREAGSGRGS LWDVVVVFDA  60
DGHMYLERGR KQFVRAHDLR LGHLLVFSYD GDAVLTVKVF DLSMCRRHYQ DDTSSGSSSD  120
SSSDSTSSRS AEMDVDDAPT SQFAVTLSVC HFLGKQQQYL NVPLEFHEAH GYAKRSKVVL  180
RMRGMDWAVN LKHNKRAGGK TRSTFRYGWH QFLVDNRLKV GDICFFRALR GNNAGRGGDD  240
GDDHELKVQV RKLDGSFVD
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_7649.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3740070.0AK374007.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3050O05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148431.11e-127B3 domain-containing protein Os03g0212300-like
SwissprotQ10Q261e-75Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLF2ECY21e-161F2ECY2_HORVV; Predicted protein
STRINGMLOC_7649.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.11e-14B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]