PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_75616.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 268aa    MW: 29058.1 Da    PI: 4.6617
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_75616.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.3e-071768447
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqky 47
                     W t E++ l+ av ++G+ +W+++a +++         g+t+ +c++r++++
     MLOC_75616.1 17 WGTLEELVLAFAVCRHGTASWDSVATEVQarsplaarPGLTPGSCRLRFRQL 68
                     9999*********************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.53E-51172IPR009057Homeodomain-like
PfamPF002492.4E-61768IPR001005SANT/Myb domain
PROSITE profilePS500906.0171769IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.9E-41770IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MAGGSDGPDV SAGGEIWGTL EELVLAFAVC RHGTASWDSV ATEVQARSPL AARPGLTPGS  60
CRLRFRQLHR RFSAGGRAED EEEEGEVGPE AEAEASAVDG WLDELRRLRV AELRREVERC  120
DLSIGTLQSK VELMKEERER SLSSGEAKPE GVTGDENLSS EEPGQSCRES NSTDLKRPGA  180
AKAEEAAKEE LSGESKESAV SLQCRRRKAS AEEESDEPLA ALLDRVAARF GPVFDQLQES  240
QVKNLRQNYR PRAARPVPFP SPSSAAAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3565360.0AK356536.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1036A11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612366.12e-64PREDICTED: uncharacterized protein LOC9269664
TrEMBLM0Z1Y80.0M0Z1Y8_HORVD; Uncharacterized protein
STRINGMLOC_75616.31e-140(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.12e-16DNA-binding bromodomain-containing protein