PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_74977.5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 307aa    MW: 33908.7 Da    PI: 8.3689
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_74977.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.83.4e-07119163554
                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   h +rEr+RR+++ ++++ L  ++ ++      K +K +i++ A  Y+++L
  MLOC_74977.5 119 HMMRERQRREKLSQSYADLYAMVSSR-----SKGDKNSIVQSAAVYLHEL 163
                   889**********************7.....6999999*****9999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-11114184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.414114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.57E-7118164No hitNo description
PfamPF000101.5E-4119163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-8119181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-5120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MQMDSYYFHD DAHFFAGCGV PGSPFADLIA SLSTEPLPAA AASQSAFREY RGVGLELPGA  60
ARGGMAGVGS KGNIHRRMMG VLARMGPSAG GSYCEEDGQE ERPQQQAAGA VESSRGFRHM  120
MRERQRREKL SQSYADLYAM VSSRSKGDKN SIVQSAAVYL HELKVAKDQL QRRNDELKAK  180
ILGHDAQQQC VKVQFEVDEP SSSIDSMIGA LRRLKSMNVK TRGIHSTLSG QRLTTEMNVE  240
TTVSFIFLLN LVLLPALLTI VNRTKLLTSW KNILQLCHLQ DFSEFPCSFS ALPHHGYIYT  300
TSILLDC
Functional Description ? help Back to Top
Source Description
UniProtMay act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269|PubMed:21332845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_74977.5
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269|PubMed:21332845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3659030.0AK365903.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2038M22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179775.11e-139transcription factor BHLH148 isoform X2
SwissprotQ75KV97e-85BH148_ORYSJ; Transcription factor BHLH148
TrEMBLM0Z0190.0M0Z019_HORVV; Uncharacterized protein
STRINGMLOC_74977.50.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59403450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.11e-25bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]