PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_74503.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GRAS
Protein Properties Length: 315aa    MW: 35028.5 Da    PI: 7.2529
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_74503.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS231.83e-71131387374
          GRAS  87 vsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                   ++P+l+++  taN aI +a+ +     +H++D++   ++QW+ Ll+ +a+Rp   +    lR+T v++    ++e l+ t+  La+ A+ l++ ++f
  MLOC_74503.1   1 MCPFLRLAGTTANYAIIDAARTVrnAVLHVVDLGGADPAQWLLLLRLFAKRPgagAHDQILRLTIVNE----DNEFLSGTAALLAREAKILHIALQF 93 
                   8*******************98764666************************74333558********....9************************ PP

          GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrll...................desvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                   +++  +  + l++++L v+ gEal + + lqlhrll                    + +++  + d++L+ + +lsPk++vv+eqeadhn ++F +r
  MLOC_74503.1  94 HPVKLHIDQLLSIDRLGVRGGEALFIVSTLQLHRLLadgfaevaarpddrkgkrqVQAHATMTRADALLRDLAGLSPKLMVVTEQEADHN-GDFKAR 189
                   **755566677*****************************************98844444444699***********************6.68**** PP

          GRAS 257 flealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgy 349
                   f +al+yy alfd+le+++p+     er+ vEr ll +ei+++vac ga+rrerhe + kW +r+++aGF+pv+++ ++++q  +l ++ +  s+ y
  MLOC_74503.1 190 FENALNYYGALFDALEESVPARGsaLERADVERCLLLQEIRDIVACDGAQRRERHEWMVKWADRMQAAGFEPVAMRADTVAQTVMLGQMLAgcSRAY 286
                   ***************99999876579**************************************************************99888888* PP

          GRAS 350 rve..eesgslvlgWkdrpLvsvSaWr 374
                   rv   e++ +++++W+d p++svS Wr
  MLOC_74503.1 287 RVIssEKDVCFFICWRDIPMFSVSTWR 313
                   *98557789999**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035141.1E-681313IPR005202Transcription factor GRAS
PROSITE profilePS5098535.361289IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MCPFLRLAGT TANYAIIDAA RTVRNAVLHV VDLGGADPAQ WLLLLRLFAK RPGAGAHDQI  60
LRLTIVNEDN EFLSGTAALL AREAKILHIA LQFHPVKLHI DQLLSIDRLG VRGGEALFIV  120
STLQLHRLLA DGFAEVAARP DDRKGKRQVQ AHATMTRADA LLRDLAGLSP KLMVVTEQEA  180
DHNGDFKARF ENALNYYGAL FDALEESVPA RGSALERADV ERCLLLQEIR DIVACDGAQR  240
RERHEWMVKW ADRMQAAGFE PVAMRADTVA QTVMLGQMLA GCSRAYRVIS SEKDVCFFIC  300
WRDIPMFSVS TWRAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-22231387375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008649505.12e-76PREDICTED: scarecrow-like protein 3
TrEMBLM0YYM90.0M0YYM9_HORVD; Uncharacterized protein
STRINGMLOC_74503.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137161330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-52scarecrow-like 3