PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_73110.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Trihelix
Protein Properties Length: 406aa    MW: 44045.2 Da    PI: 9.5703
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_73110.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.75.6e-1765148272
      trihelix   2 WtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                   Wt +e+l Li+a+r +++r   g              +++++W++v ++++  g+ rs++qC++kw+nl ++ykk+++ e +r+
  MLOC_73110.2  65 WTLHETLILITAKRLDDDRRAGGGvamagpsspptprSAEQRWKWVENYCWINGCLRSQNQCNDKWDNLLRDYKKVRDYEARRA 148
                   **************87777776534455566666666******************************************99985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.74857134IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.2E-558136IPR009057Homeodomain-like
PfamPF138371.5E-1064148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MSASSDPSPS SSAAAAVPSP LAAYQTHPHH HHNLHLSTPP HHAYPPAAPP PSPASAPRDY  60
RKGNWTLHET LILITAKRLD DDRRAGGGVA MAGPSSPPTP RSAEQRWKWV ENYCWINGCL  120
RSQNQCNDKW DNLLRDYKKV RDYEARRASI AAAAPPVDAA APAAQQQQPQ TPLPSYWTME  180
RHDRKERNLP TNLAPEVYDA LLDVLSRRAA RRGGAAIAPG APAQLALPPP PPPPPPSPPK  240
PLLNQQQQQQ QQKHHHLHPQ PPALLQLPPP LPHPSSVPSA TSVSAEEEMT GSSESGSDGL  300
GGMSGGGGGD GDEPEAKRRR RVERLGSSVV RSATVLARTL VACEDRRERR HREVLELEER  360
RLRLEAERNE VRRQGFAGLV AAVNGLSGAI HALVSDHHGR SGDSSR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316321KRRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3762790.0AK376279.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3119M05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448740.11e-100hypothetical protein SORBIDRAFT_06g032410
TrEMBLM0YUH00.0M0YUH0_HORVD; Uncharacterized protein
STRINGMLOC_73110.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.16e-43Trihelix family protein