PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_72623.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 386aa    MW: 41907.7 Da    PI: 8.5088
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_72623.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00077356379123
                   EEETTTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                   ++C+ C++ Fs+   L  H ++ H
  MLOC_72623.2 356 HVCNSCNRAFSSLKGLDDHSKMkH 379
                   79*****************99888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.203356379IPR007087Zinc finger, C2H2
PROSITE patternPS000280358379IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MTENHRFWGV VVKPGETVKC DPGDSHYHIS TIALEAGKAE ENVQVFVNTD DTRIMLGTLS  60
VHNHPHVLAD LVFKKEFELL HSSMTSNISF TGYKFDIMKR SHSCTKQGDE SDEEVPMAIP  120
LDFNTDANKN NEIAHDANKL IAPRPADAPS SIPEATVEET NTPGKQKADD KGKANAQNPI  180
DGADNESSDQ DVDYLRKKTK DDYNPMETPL NTPQGKRAKI ATPTTGNKTG YVHVATPHPA  240
AKQACKSVDH VHVVTPHPAV KQARKSGDRV HVVTPHPAAK QSHKSGDHVH VATPHPAAKQ  300
ARKSGDHFHV ATPHPAAKQA RKSGDHVHVA TPHPAAKHAR KTPENSDDKS KQSAGHVCNS  360
CNRAFSSLKG LDDHSKMKHG VASKVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3487760.0EU348776.1 Hordeum vulgare cultivar Caresse histone deacetylase HD2 isoform 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232715.11e-112PREDICTED: histone deacetylase HDT2-like isoform X3
TrEMBLM0YT590.0M0YT59_HORVD; Uncharacterized protein
STRINGMLOC_72623.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111732022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.11e-14histone deacetylase 2C