PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_70809.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GATA
Protein Properties Length: 344aa    MW: 36892.7 Da    PI: 9.0007
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_70809.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.91.2e-17180213134
          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                   Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  MLOC_70809.1 180 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKVR 213
                   *******************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.8E-13172215No hitNo description
SMARTSM004016.2E-19174225IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.2E-14178212IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.268178210IPR000679Zinc finger, GATA-type
CDDcd002029.43E-15179214No hitNo description
PROSITE patternPS003440180205IPR000679Zinc finger, GATA-type
PfamPF003202.2E-15180213IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MPDSAQTKAK KLSTLPLMDG DQDQGHFQAF HLPKDPPILF PFMIDNPVDH QGQGCGDQHS  60
GQHLFGESSQ QFNDRMMMGG GSADVFATCS PFGPTIQSIG SDMIQRSSYN SYDFEATHAS  120
DGSTSQWASA KPPVKMRIMR KAPTNDPQGG MVRKPRRRAQ AHQADESQQL QHAMGVIRVC  180
SDCNTTKTPL WRSGPCGPKS LCNACGIRQR KVRRAMAAAA ATGANGGVAS ASSGGVASGG  240
VQTSEASQAV KATKKEKRAA DLDRSLPFKK RCKMVDHPTV TSTKVVAVDA TPKHQDHVVS  300
EDVATVERLS KADPPAAFTH VFVRDEITDA AMLLMTLSCG LVRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_70809.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3607600.0AK360760.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1124O05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158916.10.0putative GATA transcription factor 22
SwissprotQ6YW481e-120CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLM0YMG40.0M0YMG4_HORVV; Uncharacterized protein
STRINGMLOC_70809.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.11e-19GATA family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]