PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_70116.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family TCP
Protein Properties Length: 357aa    MW: 38246.6 Da    PI: 7.11
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_70116.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1571.1e-481102641136
           TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 
                   aa++kdrhski+T++g+RdRR+Rls+++a++fF+Lqd+LGfdk+skt++WLl+ +k aike + +  +++s+c e++sss s++  +++        
  MLOC_70116.1 110 AAARKDRHSKICTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNTSKGAIKEVMTD--EASSDCeEDGSSSLSVADGKHKqpgteagg 204
                   589**************************************************************..666679766666666663333356788899 PP

           TCP  89 ...........kaaksaa.kskksqksaasalnlakesrakarararertrekmriknkl 136
                              +a+k a+ ++k+++k a+++l ++kesr kar+rarertrek+r+++++
  MLOC_70116.1 205 gdhadgkkpapRASKRAPaNPKPQRKLASAHLIPDKESRTKARERARERTREKNRMRWVT 264
                   99999999**9555555559999**********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.3E-44112260IPR005333Transcription factor, TCP
PROSITE profilePS5136935.116113171IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.733240257IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MFPFYDSPSP MDLPLYQQLQ LSPPSPKAPD HQSLLYYHSS PAFAADPFHH NYLCAGAGAG  60
SGAGEATPPA AEIDDQSPSE LLLMDQAPAP RPDGAGKAQG LHGGGGLDSA AARKDRHSKI  120
CTAGGMRDRR MRLSLDVARK FFALQDMLGF DKASKTVQWL LNTSKGAIKE VMTDEASSDC  180
EEDGSSSLSV ADGKHKQPGT EAGGGDHADG KKPAPRASKR APANPKPQRK LASAHLIPDK  240
ESRTKARERA RERTREKNRM RWVTLASTIN IEPATTGMAA ARLDELVTSP NNLINRSSSM  300
NTPGAELEEG CSSSMPSEAI MAGFGNGGYG SIGNYYQHQL EQQWELGGVV FANSQHY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions as a negative regulator of lateral branching, presumably through its expression in axillary buds (PubMed:12581309, PubMed:20547591). Involved in the fine tuning of shoot branching. May function as an integrator of multiple signaling pathways to regulate the development of axillary buds. Works partially downstream of strigolactones to inhibit bud outgrowth (PubMed:20547591). Binds to MADS57 to suppress the negative regulation of D14 by MADS57 and balance the expression of D14 for tillering (PubMed:23463009). {ECO:0000269|PubMed:12581309, ECO:0000269|PubMed:20547591, ECO:0000269|PubMed:23463009}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_70116.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9047380.0JF904738.1 Hordeum vulgare clone a2 tcp transcription factor (INT-C) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185348.10.0transcription factor TEOSINTE BRANCHED 1-like
SwissprotQ8LN681e-114TB1_ORYSJ; Transcription factor TB1
TrEMBLA0A220NL600.0A0A220NL60_HORVU; INTERMEDIUM-C
TrEMBLM0YK320.0M0YK32_HORVV; Tcp transcription factor Int-C
STRINGMLOC_70116.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72533651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-24TCP domain protein 12
Publications ? help Back to Top
  1. Lukens L,Doebley J
    Molecular evolution of the teosinte branched gene among maize and related grasses.
    Mol. Biol. Evol., 2001. 18(4): p. 627-38
    [PMID:11264415]
  2. Takeda T, et al.
    The OsTB1 gene negatively regulates lateral branching in rice.
    Plant J., 2003. 33(3): p. 513-20
    [PMID:12581309]
  3. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  4. Arite T, et al.
    DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice.
    Plant J., 2007. 51(6): p. 1019-29
    [PMID:17655651]
  5. Lewis JM, et al.
    Overexpression of the maize Teosinte Branched1 gene in wheat suppresses tiller development.
    Plant Cell Rep., 2008. 27(7): p. 1217-25
    [PMID:18392625]
  6. Minakuchi K, et al.
    FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice.
    Plant Cell Physiol., 2010. 51(7): p. 1127-35
    [PMID:20547591]
  7. Mondragón-Palomino M,Trontin C
    High time for a roll call: gene duplication and phylogenetic relationships of TCP-like genes in monocots.
    Ann. Bot., 2011. 107(9): p. 1533-44
    [PMID:21444336]
  8. Xia K, et al.
    OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice.
    PLoS ONE, 2012. 7(1): p. e30039
    [PMID:22253868]
  9. Guo S, et al.
    The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14.
    Nat Commun, 2013. 4: p. 1566
    [PMID:23463009]
  10. Byeon Y,Back K
    An increase in melatonin in transgenic rice causes pleiotropic phenotypes, including enhanced seedling growth, delayed flowering, and low grain yield.
    J. Pineal Res., 2014. 56(4): p. 408-14
    [PMID:24571270]
  11. Yano K, et al.
    Isolation of a novel lodging resistance QTL gene involved in strigolactone signaling and its pyramiding with a QTL gene involved in another mechanism.
    Mol Plant, 2015.
    [PMID:25381289]
  12. Chen Z,Gao X,Zhang J
    Alteration of osa-miR156e expression affects rice plant architecture and strigolactones (SLs) pathway.
    Plant Cell Rep., 2015. 34(5): p. 767-81
    [PMID:25604991]
  13. Yano K, et al.
    Isolation of a novel lodging resistance QTL gene involved in strigolactone signaling and its pyramiding with a QTL gene involved in another mechanism.
    Mol Plant, 2015. 8(2): p. 303-14
    [PMID:25616386]
  14. Jung H,Lee DK,Choi YD,Kim JK
    OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth.
    Plant Sci., 2015. 236: p. 304-12
    [PMID:26025543]
  15. Li S
    The Arabidopsis thaliana TCP transcription factors: A broadening horizon beyond development.
    Plant Signal Behav, 2015. 10(7): p. e1044192
    [PMID:26039357]
  16. Yang X, et al.
    Distinct Regulatory Changes Underlying Differential Expression of TEOSINTE BRANCHED1-CYCLOIDEA-PROLIFERATING CELL FACTOR Genes Associated with Petal Variations in Zygomorphic Flowers of Petrocosmea spp. of the Family Gesneriaceae.
    Plant Physiol., 2015. 169(3): p. 2138-51
    [PMID:26351309]
  17. De Paolo S,Gaudio L,Aceto S
    Analysis of the TCP genes expressed in the inflorescence of the orchid Orchis italica.
    Sci Rep, 2015. 5: p. 16265
    [PMID:26531864]
  18. Álvarez-Salgado E,Arredondo-Peter R
    Effect of the synthesis of rice non-symbiotic hemoglobins 1 and 2 in the recombinant Escherichia coli TB1 growth.
    F1000Res, 2015. 4: p. 1053
    [PMID:26973784]
  19. Li X, et al.
    MicroRNA393 is involved in nitrogen-promoted rice tillering through regulation of auxin signal transduction in axillary buds.
    Sci Rep, 2016. 6: p. 32158
    [PMID:27574184]