PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_69925.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 287aa    MW: 31733.8 Da    PI: 4.7974
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_69925.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.73e-184089255
           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  +++G+r+++ +g+W+AeIrdps+     r++lg+f +aeeAa+a++  +++++g
  MLOC_69925.2 40 QFRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTFNSAEEAARAYDVEARRIRG 89
                  69*******.**********965...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.9E-3740103IPR001471AP2/ERF domain
CDDcd000187.82E-334098No hitNo description
Gene3DG3DSA:3.30.730.101.2E-314098IPR001471AP2/ERF domain
PROSITE profilePS5103223.4334097IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-214098IPR016177DNA-binding domain
PfamPF008478.4E-114189IPR001471AP2/ERF domain
PRINTSPR003678.8E-114152IPR001471AP2/ERF domain
PRINTSPR003678.8E-116379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
VLDLFIHISL KDHSDDFSII TTAGCDGPAQ RSAKRKRKNQ FRGIRQRPWG KWAAEIRDPS  60
KGVRVWLGTF NSAEEAARAY DVEARRIRGK KAKVNFPEEP TVPQKRRVRP APLKAPKLSA  120
SQEPTVIPAV NNLANPNAFV YPSADFASNQ PPVQPDNVPF VPAMKFAAPV EAPVMNMYSD  180
QGSNSFGCSD LGWDYETKTP DISSVAPIST VAEGAESALI QSNTYNSVVP PVMENNAVDF  240
EPWTRFLMDD GVDEPIDSLL NFDVPQDVVS NMDLWSFGDM PICGEFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-214097260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2516810.0AK251681.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf129h12, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006648015.11e-136PREDICTED: ethylene-responsive transcription factor 1
SwissprotQ6K7E61e-131ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLM0YJE40.0M0YJE4_HORVD; Uncharacterized protein
STRINGMLOC_69925.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.22e-36related to AP2 12