PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_69121.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 212aa    MW: 23083.5 Da    PI: 8.5018
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_69121.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.1e-112974454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                   h+e ErrRR+riN+ +++Lr+++P a       ++Ka+ L  +v+ +k+L
  MLOC_69121.2 29 VHSESERRRRERINTHLATLRRMIPDA-----NQMDKATLLACVVNQVKEL 74
                  59************************8.....4799999998888877776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-131780IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.4182574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-122980IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-82974IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-113180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550213.66E-5112174No hitNo description
CDDcd048730.00347116158No hitNo description
Gene3DG3DSA:3.30.70.2606.5E-4116157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MAACQGPASV PELSSSSGRS ATAVRSLKVH SESERRRRER INTHLATLRR MIPDANQMDK  60
ATLLACVVNQ VKELKRKATE TTRLQATALI PPEANEMTVD CYTAAGDNRT TCIRATVSCD  120
DRPGLFVGLA EAFRGLGLRM LRTETASLGG RACHVFVLCK EGGDVGAGLR TLEWAVRQAM  180
GEVVFPEMAC GDSSWSKRER ILEGHCPVMY SV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13338ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3685370.0AK368537.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2075J21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566506.15e-76PREDICTED: transcription factor bHLH30-like
TrEMBLM0YGM31e-156M0YGM3_HORVD; Uncharacterized protein
STRINGMLOC_69121.21e-155(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.16e-24basic helix-loop-helix 32