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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_69002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | ERF | ||||||||
Protein Properties | Length: 301aa MW: 32384.2 Da PI: 7.8173 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.8 | 2.3e-17 | 49 | 99 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++ GVr+++ +grWvAeI+d + ++ r +lg+f ta+ Aa+a+++a++ l+g MLOC_69002.1 49 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETADAAARAYDEAARLLRG 99 79********.7*********32...35***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.1E-11 | 49 | 99 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-19 | 49 | 108 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.76E-17 | 49 | 107 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.6E-27 | 50 | 107 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.849 | 50 | 107 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-33 | 50 | 113 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.6E-7 | 51 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.6E-7 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0035865 | Biological Process | cellular response to potassium ion | ||||
GO:0048528 | Biological Process | post-embryonic root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MELHFQVQPA VLQLQDYCYY YQHQQQEAAA VQAKPTKPRG RKKGSTSHSK FVGVRQRPSG 60 RWVAEIKDTT QKIRMWLGTF ETADAAARAY DEAARLLRGA EARTNFAPRI SPDCPLAVRI 120 RGLLHHKKLK KARLPAASAN IPGPSSTPAA PATYAPSNSN SNSNSNSNSN SMDGGACGGA 180 SSSSSSSAVS CDGAMKQGGG EVYRPDFAPV AGAEELESWM FESSFGQFPA LDGFAAVDAC 240 TLPAASPEET SASGMVEFER MKVERRISAS LYAMNGLQEY FDKVFEASAG DPLWDLSPLC 300 Q |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00521 | DAP | Transfer from AT5G19790 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374106 | 0.0 | AK374106.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3054G17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646240.1 | 1e-121 | PREDICTED: ethylene-responsive transcription factor RAP2-11-like | ||||
TrEMBL | F2ED81 | 0.0 | F2ED81_HORVD; Predicted protein | ||||
STRING | MLOC_69002.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3900 | 32 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 4e-20 | related to AP2 11 |