PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_67972.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 54aa    MW: 5848.42 Da    PI: 4.152
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_67972.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.90.00011183855
                  STCHHHHHHHHHHHHHHH CS
           HLH 38 lsKaeiLekAveYIksLq 55
                  +sK ++L  A+++Ik+Lq
  MLOC_67972.3  1 MSKESTLADAIDHIKKLQ 18
                  59***************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-5136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-4128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 54 aa     Download sequence    Send to blast
MSKESTLADA IDHIKKLQNQ VLELQSQLAD SPGEAWEKQG SASCSESFAP TDNI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a crucial role in tapetum development. Required for male fertility and pollen differentiation within the developing anther. Plays a major role in maintaining tapetum development, starting in early meiosis. Required for pollen mother cell meiosis. May regulate the anther-specific cysteine protease CP1 and lipid-transfer proteins C4 and C6 (PubMed:16141453). Required for anther development. Functions in parallel with GAMYB to regulate early anther development. Functions upstream of the transcription factor TDR and may positively regulate its transcription (PubMed:20590996). {ECO:0000269|PubMed:16141453, ECO:0000269|PubMed:20590996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_67972.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0627732e-43BT062773.1 Zea mays full-length cDNA clone ZM_BFb0344I08 mRNA, complete cds.
GenBankBT0684942e-43BT068494.1 Zea mays full-length cDNA clone ZM_BFb0227D06 mRNA, complete cds.
GenBankEU9593212e-43EU959321.1 Zea mays clone 215950 mRNA sequence.
GenBankKJ7267912e-43KJ726791.1 Zea mays clone pUT2277 bHLH transcription factor (bHLH66) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562948.11e-29transcription factor UDT1
SwissprotB9FXT38e-25UDT1_ORYSJ; Transcription factor UDT1
TrEMBLA0A287HTT79e-30A0A287HTT7_HORVV; Uncharacterized protein
TrEMBLA0A287HU462e-30A0A287HU46_HORVV; Uncharacterized protein
STRINGMLOC_67972.12e-30(Hordeum vulgare)
Publications ? help Back to Top
  1. Liu Z,Bao W,Liang W,Yin J,Zhang D
    Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development.
    J Integr Plant Biol, 2010. 52(7): p. 670-8
    [PMID:20590996]