PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_67874.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 102aa    MW: 11096.8 Da    PI: 8.4927
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_67874.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.8e-0967102239
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 
                      g +T eEd +++ +  qlG++ W++Ia+ +  +Rt+++
     MLOC_67874.2  67 GGFTDEEDAIIYSLYSQLGSK-WSLIASQLE-RRTDND 102
                      569******************.*********.****96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.82E-1746101IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-124672IPR009057Homeodomain-like
PROSITE profilePS500904.0774760IPR017877Myb-like domain
PROSITE profilePS5129416.7561102IPR017930Myb domain
PfamPF002491.7E-767102IPR001005SANT/Myb domain
CDDcd001674.42E-669102No hitNo description
Gene3DG3DSA:1.10.10.601.6E-1173102IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MATPAAGSPS PPKPVSSLAR SLPLPCPAVP LVVLDVSPSC VCVGLKRCGK SCRLRWLNYL  60
RPDIRHGGFT DEEDAIIYSL YSQLGSKWSL IASQLERRTD ND
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3764097e-94AK376409.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3123B18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564735.13e-34PREDICTED: transcription factor RAX1-like
SwissprotQ9FKL21e-29MYB36_ARATH; Transcription factor MYB36
TrEMBLM0YCE74e-69M0YCE7_HORVD; Uncharacterized protein
STRINGMLOC_67874.18e-37(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.13e-30myb domain protein 87