PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_67834.5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 377aa    MW: 40571.4 Da    PI: 7.3833
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_67834.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.6e-13319364655
                   HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  MLOC_67834.5 319 SIAERVRRTRISERIRKLQELVPNM----DKQTNTADMLDLAVDYIKELQ 364
                   689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.326313363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-15316369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.51E-14317368No hitNo description
Gene3DG3DSA:4.10.280.102.3E-14318368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-14319369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-10319364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MYGSPASPDL NQPPPPMNSS GLLRYRSAPS TLLGEVCEEF LQPGPRAASP DAAAAAAADN  60
VFSRFLADHQ IRDTKPPPPP PVAHFPDDAA AMASQHHHHQ QQQMMFHSHQ QQQQQQMPPV  120
GVEGLYRTVS SAGMDSAAAA NGIGNDSLLR QSSSPAGFLN HLNMDNGYES MLRQGMGVGF  180
RNGATNAAAA VDSSGSGGGR LKGQLSFSSR QGSLMSQISE MGSEDLGGSS PEGAGGSRGY  240
IPGYPMSSGW EESSLMSENM SGMKRPRDSS EPAQNGLAHQ FSLPKTSSEM AAIEKFLQFQ  300
DAVPCKIRAK RGCATHPRSI AERVRRTRIS ERIRKLQELV PNMDKQTNTA DMLDLAVDYI  360
KELQEQVKVR KIITSLP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3546340.0AK354634.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1009F18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574744.10.0PREDICTED: transcription factor bHLH130-like
TrEMBLM0YCA00.0M0YCA0_HORVD; Uncharacterized protein
STRINGMLOC_67834.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.14e-43bHLH family protein