PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_67053.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 240aa    MW: 26758.2 Da    PI: 8.63
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_67053.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.91.2e-1565117155
                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                   r+++hn+ Er RR+++N+ ++ Lr+llP  +   ++kK+s  +++ ++++YI +Lq
  MLOC_67053.1  65 RKMSHNAYERDRRKQLNEQYSSLRSLLPDdD---HNKKMSIPTTVSRVIKYIPELQ 117
                   799**************************66...*******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-1762133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.29E-1263120No hitNo description
PROSITE profilePS5088815.14864116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-1465132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.8E-1365117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-1070122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGHQHQMFND PFASSMSSLE ADIFSGAGGY HHFAPSPQWP GLDNNIPAAP AANNATSSGG  60
SGSQRKMSHN AYERDRRKQL NEQYSSLRSL LPDDDHNKKM SIPTTVSRVI KYIPELQKEV  120
DGLEKKKEEL RRASCEQGLL TMRQNTAPVV SATCLDDREI MVQVSLVSTM AAALPMSKCI  180
KVLENEGLRL INSSTSAFQN RTFYSLHLQR TQRTMSKEGQ TFCNELENAV KQKAGLHLHH
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA motif 5'-CACGTGG-3' in the promoter of iron (Fe) deficiency-inducible genes as well as of genes involved in iron homeostasis, thus contributing to basal tolerance to iron deficiency, iron uptake from soil and iron transport, particularly during seed maturation and germination. Promotes the accumulation of mugineic acid family phytosiderophores (MAs). Required for ethylene-mediated signaling during iron deficiency responses. Improves growth and yield, especially in calcareous soil with low iron availability. Promotes iron concentration in shoots and grain. {ECO:0000250|UniProtKB:Q0JFZ0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_67053.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3712100.0AK371210.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2128C09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193396.11e-166transcription factor ORG2-like
SwissprotA2WZ604e-85IRO2_ORYSI; Protein IRON-RELATED TRANSCRIPTION FACTOR 2
TrEMBLM0Y9L20.0M0Y9L2_HORVV; Uncharacterized protein
STRINGMLOC_67053.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32803472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.14e-32bHLH family protein