PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_64014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Trihelix
Protein Properties Length: 297aa    MW: 32155.9 Da    PI: 8.9118
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_64014.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix90.81.5e-2844131286
      trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr...tsessstcpyfdqle 86 
                   W ++e+l Li++rrem+++++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk + ++++    + + s +++y+++++
  MLOC_64014.1  44 WVQDETLSLIALRREMDNHFNTSKSNKHLWEAISAKMREQGFDRSPTMCTDKWRNLLKEFKKARSHARSSggaSGNGSAKMAYYKEID 131
                   ****************************************************************998875444567788999999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.38636100IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.0E-436104IPR009057Homeodomain-like
SMARTSM007176.6E-540102IPR001005SANT/Myb domain
CDDcd122031.51E-2942107No hitNo description
PfamPF138377.1E-2043133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MLLAGPQPPT PSLLLPESSG EDGGAHDHDS SSRASAPKKR AETWVQDETL SLIALRREMD  60
NHFNTSKSNK HLWEAISAKM REQGFDRSPT MCTDKWRNLL KEFKKARSHA RSSGGASGNG  120
SAKMAYYKEI DDLLKRRGKA ASSPAGSGGG GGAAKSPTPT SKIESYLQFA DKGFEDANIP  180
FGPVEASHPI ALTTADAVAT NGVNPWNWRD TSTNGGDNHG TYGGRVILVK WGDYTKRIGI  240
DGTAEAIKEA IKSAFGLRTR RAFWLEDEDE VVRSLDRDMP VGIYALHLDN VIGKSGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A1e-4438129186DNA binding protein GT-1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00004PBMTransfer from 920224Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3539430.0AK353943.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1003P04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580010.11e-157PREDICTED: trihelix transcription factor GT-1
SwissprotQ9FX531e-123TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLM0XXT10.0M0XXT1_HORVD; Uncharacterized protein
STRINGMLOC_64014.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56313752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-103Trihelix family protein