PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_6315.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 240aa    MW: 26299.9 Da    PI: 6.3617
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_6315.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.91e-0973121354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +++  rE+ RRd++N++f eL + l +    +  K +Ka+iL  A++ + +L
  MLOC_6315.1  73 TSKACREKVRRDKLNDRFLELGTTLDPG---KPVKADKAAILSDATRMVTQL 121
                  67889**********************9...99**************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-1269138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.170121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.90E-871124No hitNo description
Gene3DG3DSA:4.10.280.102.1E-1273144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-773121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-776127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MSLPPTDGGD DWFLDCGILE DLPAAACGAF PWDASVSSSN PSAEVGSYVN NSDVPKDSSS  60
NKRLRSGPCG RPTSKACREK VRRDKLNDRF LELGTTLDPG KPVKADKAAI LSDATRMVTQ  120
LRAEAKQLKD TNGSLEDKIK ELKAEKDELR DEKQKLKLEK ETLEHQMKLL TATPAYMPHP  180
TMMHSPFAQA PMAPFHAQGH ASAQKLMMPF VGYPGYPMWQ LMPPSEVDTS KDSEACPPVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3718950.0AK371895.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2142O15.
GenBankAK3687320.0AK368732.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2078N16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573355.11e-148PREDICTED: transcription factor ILR3
SwissprotQ9FH374e-70ILR3_ARATH; Transcription factor ILR3
TrEMBLF2DXW41e-179F2DXW4_HORVD; Predicted protein
STRINGMLOC_6315.11e-178(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20233885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.11e-56bHLH family protein