PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_61947.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family LBD
Protein Properties Length: 103aa    MW: 10519.2 Da    PI: 8.6141
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_61947.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260105.83.4e-3320103183
        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                   +C aCk+lrr+C+++Cv+apyf +eq +++fa++hk+FGasn  kll++lp  +r +a+ +++yeA+ r+rdPvyG+v+ i++l
  MLOC_61947.2  20 PCGACKFLRRRCVAECVFAPYFSSEQgAARFAAIHKVFGASNAAKLLAHLPLADRCEAVVTITYEAQSRLRDPVYGCVAQIFAL 103
                   7***********************9989***************************************************99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.34619103IPR004883Lateral organ boundaries, LOB
PfamPF031953.5E-3220103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MAAAPGGGGG GGVAGVAGSP CGACKFLRRR CVAECVFAPY FSSEQGAARF AAIHKVFGAS  60
NAAKLLAHLP LADRCEAVVT ITYEAQSRLR DPVYGCVAQI FAL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00309DAPTransfer from AT2G42430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3685151e-168AK368515.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2075A19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006648133.22e-53PREDICTED: LOB domain-containing protein 16-like, partial
RefseqXP_015626197.13e-53PREDICTED: LOB domain-containing protein 16
SwissprotQ9SLB72e-50LBD16_ARATH; LOB domain-containing protein 16
TrEMBLF2DX977e-69F2DX97_HORVD; Predicted protein
TrEMBLM0XPN38e-69M0XPN3_HORVD; Uncharacterized protein
STRINGMLOC_61947.12e-68(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.15e-44lateral organ boundaries-domain 16